1 sCache_3_3#1
121-170 aa · 50 aa · 9.3% of protein
Raw token
sCache_3_3:121:0.0000731:170:56:107P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN283_RS04495
Probable incomplete histidine kinase
Bacillus thuringiensis · GCF_002559855
ClassHKTypeClassicLength535 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_002559855#CN283_RS04495Stable P2CS identifier used across views.
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 CN283_RS04495MIST4
Domain signature
Compact overview inferred from the domain field
sCache_3_3PAS_8HATPase_c
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage207 / 535 aa (38.7%)Merged over positioned domains only.
Domain description1 sCache_3_3,1 PAS_8,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 PAS_8#2
216-268 aa · 53 aa · 9.9% of protein
Raw token
PAS_8:216:0.00000176:268:53:653 HATPase_c#3
430-533 aa · 104 aa · 19.4% of protein
Raw token
HATPase_c:430:1.03e-16:533:106:109- Raw architecture: sCache_3_3:121:0.0000731:170:56:107#PAS_8:216:0.00000176:268:53:65#HATPase_c:430:1.03e-16:533:106:109
- Domain description: 1 sCache_3_3,1 PAS_8,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN283_RS04495Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559855
AssemblyASM255985v1 · Scaffoldhaploid
Genome composition5 907 020 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 123 · HK 66 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key