1 HAMP#1
161-229 aa · 69 aa · 14.9% of protein
Raw token
HAMP:161:0.00000000000000272:229:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN283_RS04040
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002559855
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559855#CN283_RS04040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 463 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
234-299 aa · 66 aa · 14.3% of protein
Raw token
HisKA:234:0.0000000000000117:299:66:643 HATPase_c#3
346-454 aa · 109 aa · 23.5% of protein
Raw token
HATPase_c:346:1.1e-36:454:109:109- Raw architecture: HAMP:161:0.00000000000000272:229:69:69#HisKA:234:0.0000000000000117:299:66:64#HATPase_c:346:1.1e-36:454:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559855::NZ_NTQE01000004.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76727-78807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN283_04040RefSeq proteinWP_000822579.1
Context group ID
GCF_002559855::NZ_NTQE01000004.1::G00048Context members
CN283_RS04035CN283_RS04040
Partner locus tags
CN283_RS04035CN283_RS04040
Partner old locus tags
CN283_04035CN283_04040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000822579.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XL41Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XL41_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN283_RS04040Primary locus identifier stored in the genes table.
Old locus tagCN283_04040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTQE01000004.1Sequence record reported by the local genomic context database.
Genomic interval77 416-78 807 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 727-78 807 ntGCF_002559855::NZ_NTQE01000004.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559855::NZ_NTQE01000004.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTQE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span76 727-78 807 nt2 081 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 727 nt78 807 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN283_RS04035GCF_002559855#CN283_RS04035
RROmpR
76 727-77 404 nt · Forward (+)
CN283_RS04040GCF_002559855#CN283_RS04040
HKClassicCurrent focus
77 416-78 807 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS27595Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1795665
Simplified PFAM architecture for HKOC_1795665
PFAM domain coverage: 226 / 463 aa (48.8%)
1 aa463 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-229] | HisKA[235-299] | HATPase_c[346-454]
- Domain count: 3
- Matched identifier: HKOC_1795665
- Positioned domains: HAMP 178-229 ; HisKA 235-299 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS27595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002559855
AssemblyASM255985v1 · Scaffoldhaploid
Genome composition5 907 020 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 123 · HK 66 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key