1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:3.3e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN476_RS13815
Response regulator NarL family
Bacillus cereus · GCF_002559215
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002559215#CN476_RS13815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 211 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa211 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
148-205 aa · 58 aa · 27.5% of protein
Raw token
HTH_LUXR:148:2.27e-24:205:58:58- Raw architecture: Response_reg:6:3.3e-35:116:111:111#HTH_LUXR:148:2.27e-24:205:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002559215::NZ_NTYD01000019.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20308-22077Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN476_13815RefSeq proteinWP_098252918.1
Context group ID
GCF_002559215::NZ_NTYD01000019.1::G00015Context members
CN476_RS13815CN476_RS13820
Partner locus tags
CN476_RS13815CN476_RS13820
Partner old locus tags
CN476_13815CN476_13820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_098252918.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN476_RS13815Primary locus identifier stored in the genes table.
Old locus tagCN476_13815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTYD01000019.1Sequence record reported by the local genomic context database.
Genomic interval20 308-20 943 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 308-22 077 ntGCF_002559215::NZ_NTYD01000019.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002559215::NZ_NTYD01000019.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTYD01000019.1All displayed genes belong to this local TCS context.
Neighborhood span20 308-22 077 nt1 770 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 308 nt22 077 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN476_RS13815GCF_002559215#CN476_RS13815
RRNarLCurrent focus
20 308-20 943 nt · Reverse (-)
CN476_RS13820GCF_002559215#CN476_RS13820
HKClassic
20 959-22 077 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002559215#CN476_RS13815The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2006472
Simplified PFAM architecture for RROC_2006472
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2006472
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_002559215#CN476_RS13815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_002559215
AssemblyASM255921v1 · Scaffoldhaploid
Genome composition5 098 664 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 96 · HK 52 · RR 44CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key