1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:1.76e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN474_RS07815
Response regulator OmpR family
Bacillus thuringiensis · GCF_002558385
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558385#CN474_RS07815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 223 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
143-220 aa · 78 aa · 35.0% of protein
Raw token
Trans_reg_C:143:4.54e-27:220:78:77- Raw architecture: Response_reg:4:1.76e-35:113:111:111#Trans_reg_C:143:4.54e-27:220:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558385::NZ_NTXT01000019.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46756-48947Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN474_07820RefSeq proteinWP_000238956.1
Context group ID
GCF_002558385::NZ_NTXT01000019.1::G00021Context members
CN474_RS07815CN474_RS07820
Partner locus tags
CN474_RS07815CN474_RS07820
Partner old locus tags
CN474_07820CN474_07825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000238956.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KP74Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KP74_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN474_RS07815Primary locus identifier stored in the genes table.
Old locus tagCN474_07820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTXT01000019.1Sequence record reported by the local genomic context database.
Genomic interval46 756-47 427 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 756-48 947 ntGCF_002558385::NZ_NTXT01000019.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558385::NZ_NTXT01000019.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTXT01000019.1All displayed genes belong to this local TCS context.
Neighborhood span46 756-48 947 nt2 192 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 756 nt48 947 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN474_RS07815GCF_002558385#CN474_RS07815
RROmpRCurrent focus
46 756-47 427 nt · Forward (+)
CN474_RS07820GCF_002558385#CN474_RS07820
HKClassic
47 493-48 947 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161035#BCERE0011_RS02705Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587495
Simplified PFAM architecture for RROC_1587495
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1587495
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000161035#BCERE0011_RS02705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558385
AssemblyASM255838v1 · Scaffoldhaploid
Genome composition6 138 536 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key