1 HisKA_3#1
573-639 aa · 67 aa · 8.7% of protein
Raw token
HisKA_3:573:0.00000000071:639:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN474_RS07545
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002558385
ClassHKTypeClassicLength772 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558385#CN474_RS07545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length772 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 772 aa (20.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa772 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
678-770 aa · 93 aa · 12.0% of protein
Raw token
HATPase_c:678:0.00000000000000887:770:106:109- Raw architecture: HisKA_3:573:0.00000000071:639:68:68#HATPase_c:678:0.00000000000000887:770:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558385::NZ_NTXT01000018.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132178-135141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN474_07550RefSeq proteinWP_016513218.1
Context group ID
GCF_002558385::NZ_NTXT01000018.1::G00019Context members
CN474_RS07540CN474_RS07545
Partner locus tags
CN474_RS07540CN474_RS07545
Partner old locus tags
CN474_07545CN474_07550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016513218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN474_RS07545Primary locus identifier stored in the genes table.
Old locus tagCN474_07550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTXT01000018.1Sequence record reported by the local genomic context database.
Genomic interval132 823-135 141 nt2 319 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 178-135 141 ntGCF_002558385::NZ_NTXT01000018.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558385::NZ_NTXT01000018.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTXT01000018.1All displayed genes belong to this local TCS context.
Neighborhood span132 178-135 141 nt2 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 178 nt135 141 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN474_RS07540GCF_002558385#CN474_RS07540
RRNarL
132 178-132 819 nt · Reverse (-)
CN474_RS07545GCF_002558385#CN474_RS07545
HKClassicCurrent focus
132 823-135 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS20315Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0613924
Simplified PFAM architecture for HKOC_0613924
PFAM domain coverage: 156 / 772 aa (20.2%)
1 aa772 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[573-638] | HATPase_c[681-770]
- Domain count: 2
- Matched identifier: HKOC_0613924
- Positioned domains: HisKA_3 573-638 ; HATPase_c 681-770
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS20315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558385
AssemblyASM255838v1 · Scaffoldhaploid
Genome composition6 138 536 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key