1 Response_reg#1
4-115 aa · 112 aa · 52.6% of protein
Raw token
Response_reg:4:6.62e-18:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN474_RS07540
Response regulator NarL family
Bacillus thuringiensis · GCF_002558385
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558385#CN474_RS07540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 213 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-203 aa · 57 aa · 26.8% of protein
Raw token
HTH_LUXR:147:0.00000000000000376:203:57:58- Raw architecture: Response_reg:4:6.62e-18:115:112:111#HTH_LUXR:147:0.00000000000000376:203:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558385::NZ_NTXT01000018.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132178-135141Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN474_07545RefSeq proteinWP_000621765.1
Context group ID
GCF_002558385::NZ_NTXT01000018.1::G00019Context members
CN474_RS07540CN474_RS07545
Partner locus tags
CN474_RS07540CN474_RS07545
Partner old locus tags
CN474_07545CN474_07550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000621765.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X0K0I6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X0K0I6_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN474_RS07540Primary locus identifier stored in the genes table.
Old locus tagCN474_07545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTXT01000018.1Sequence record reported by the local genomic context database.
Genomic interval132 178-132 819 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 178-135 141 ntGCF_002558385::NZ_NTXT01000018.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558385::NZ_NTXT01000018.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTXT01000018.1All displayed genes belong to this local TCS context.
Neighborhood span132 178-135 141 nt2 964 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 178 nt135 141 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN474_RS07540GCF_002558385#CN474_RS07540
RRNarLCurrent focus
132 178-132 819 nt · Reverse (-)
CN474_RS07545GCF_002558385#CN474_RS07545
HKClassic
132 823-135 141 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021205#BCB4264_RS25930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962588
Simplified PFAM architecture for RROC_1962588
PFAM domain coverage: 166 / 213 aa (77.9%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-115] | GerE[148-201]
- Domain count: 2
- Matched identifier: RROC_1962588
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GerE 148-201 ; GerE 148-201
Cluster members and taxonomy
Representative gene: GCF_000021205#BCB4264_RS25930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558385
AssemblyASM255838v1 · Scaffoldhaploid
Genome composition6 138 536 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key