1 HisKA#1
188-248 aa · 61 aa · 15.2% of protein
Raw token
HisKA:188:0.000000000000251:248:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN474_RS04215
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002558385
ClassHKTypeClassicLength402 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002558385#CN474_RS04215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length402 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 402 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa402 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-398 aa · 105 aa · 26.1% of protein
Raw token
HATPase_c:294:2.64e-24:398:108:109- Raw architecture: HisKA:188:0.000000000000251:248:61:64#HATPase_c:294:2.64e-24:398:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002558385::NZ_NTXT01000009.1::G00072
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span39470-40678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN474_04215RefSeq proteinWP_000964151.1
Context group ID
GCF_002558385::NZ_NTXT01000009.1::G00072Context members
CN474_RS04215
Partner locus tags
CN474_RS04215
Partner old locus tags
CN474_04215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000964151.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KRT9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KRT9_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN474_RS04215Primary locus identifier stored in the genes table.
Old locus tagCN474_04215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTXT01000009.1Sequence record reported by the local genomic context database.
Genomic interval39 470-40 678 nt1 209 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 470-40 678 ntGCF_002558385::NZ_NTXT01000009.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558385::NZ_NTXT01000009.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTXT01000009.1All displayed genes belong to this local TCS context.
Neighborhood span39 470-40 678 nt1 209 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 470 nt40 678 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CN474_RS04215GCF_002558385#CN474_RS04215
HKClassicCurrent focus
39 470-40 678 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007825#BC_RS06675Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2422819
Simplified PFAM architecture for HKOC_2422819
PFAM domain coverage: 313 / 402 aa (77.9%)
1 aa402 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[16-164] | HisKA[188-248] | HATPase_c[296-398]
- Domain count: 3
- Matched identifier: HKOC_2422819
- Positioned domains: 5TM-5TMR_LYT 16-164 ; HisKA 188-248 ; HATPase_c 296-398
Cluster members and taxonomy
Representative gene: GCF_000007825#BC_RS06675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558385
AssemblyASM255838v1 · Scaffoldhaploid
Genome composition6 138 536 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key