1 HisKA_3#1
149-216 aa · 68 aa · 19.4% of protein
Raw token
HisKA_3:149:1.41e-22:216:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN474_RS00215
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002558385
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002558385#CN474_RS00215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 351 aa (45.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-342 aa · 91 aa · 25.9% of protein
Raw token
HATPase_c:252:5.9e-16:342:106:109- Raw architecture: HisKA_3:149:1.41e-22:216:68:68#HATPase_c:252:5.9e-16:342:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002558385::NZ_NTXT01000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40229-41913Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN474_00215RefSeq proteinWP_000744326.1
Context group ID
GCF_002558385::NZ_NTXT01000001.1::G00025Context members
CN474_RS00215CN474_RS00220
Partner locus tags
CN474_RS00215CN474_RS00220
Partner old locus tags
CN474_00215CN474_00220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000744326.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4HMY8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4HMY8_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN474_RS00215Primary locus identifier stored in the genes table.
Old locus tagCN474_00215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NTXT01000001.1Sequence record reported by the local genomic context database.
Genomic interval40 229-41 284 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span40 229-41 913 ntGCF_002558385::NZ_NTXT01000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002558385::NZ_NTXT01000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NTXT01000001.1All displayed genes belong to this local TCS context.
Neighborhood span40 229-41 913 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 229 nt41 913 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN474_RS00215GCF_002558385#CN474_RS00215
HKClassicCurrent focus
40 229-41 284 nt · Forward (+)
CN474_RS00220GCF_002558385#CN474_RS00220
RRNarL
41 281-41 913 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000021205#BCB4264_RS07395Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792539
Simplified PFAM architecture for HKOC_2792539
PFAM domain coverage: 160 / 351 aa (45.6%)
1 aa351 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[149-216] | HATPase_c[252-343]
- Domain count: 2
- Matched identifier: HKOC_2792539
- Positioned domains: HisKA_3 149-216 ; HATPase_c 252-343
Cluster members and taxonomy
Representative gene: GCF_000021205#BCB4264_RS07395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002558385
AssemblyASM255838v1 · Scaffoldhaploid
Genome composition6 138 536 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key