1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.00000053:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN557_RS02020
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002557405
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002557405#CN557_RS02020Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.00000000000254:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:1.27e-26:364:113:109- Raw architecture: HAMP:63:0.00000053:130:68:69#HisKA:141:0.00000000000254:208:68:64#HATPase_c:253:1.27e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002557405::NZ_NUBS01000003.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151069-152866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN557_02020RefSeq proteinWP_048541136.1
Context group ID
GCF_002557405::NZ_NUBS01000003.1::G00048Context members
CN557_RS02020CN557_RS02025
Partner locus tags
CN557_RS02020CN557_RS02025
Partner old locus tags
CN557_02020CN557_02025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_048541136.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN557_RS02020Primary locus identifier stored in the genes table.
Old locus tagCN557_02020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUBS01000003.1Sequence record reported by the local genomic context database.
Genomic interval151 069-152 175 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 069-152 866 ntGCF_002557405::NZ_NUBS01000003.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002557405::NZ_NUBS01000003.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUBS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span151 069-152 866 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 069 nt152 866 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN557_RS02020GCF_002557405#CN557_RS02020
HKClassicCurrent focus
151 069-152 175 nt · Reverse (-)
CN557_RS02025GCF_002557405#CN557_RS02025
RROmpR
152 168-152 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS01355Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698673
Simplified PFAM architecture for HKOC_2698673
PFAM domain coverage: 223 / 368 aa (60.6%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2698673
- Positioned domains: HAMP 84-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS01355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002557405
AssemblyASM255740v1 · Scaffoldhaploid
Genome composition5 529 279 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 119 · HK 63 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key