1 Response_reg#1
6-111 aa · 106 aa · 47.5% of protein
Raw token
Response_reg:6:5.57e-30:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN639_RS09635
Response regulator OmpR family
Bacillus toyonensis · GCF_002555585
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002555585#CN639_RS09635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-217 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:144:6.35e-17:217:77:77- Raw architecture: Response_reg:6:5.57e-30:111:109:111#Trans_reg_C:144:6.35e-17:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002555585::NZ_NUDS01000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19910-21579Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN639_09640RefSeq proteinWP_087997077.1
Context group ID
GCF_002555585::NZ_NUDS01000018.1::G00015Context members
CN639_RS09630CN639_RS09635
Partner locus tags
CN639_RS09630CN639_RS09635
Partner old locus tags
CN639_09635CN639_09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_087997077.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN639_RS09635Primary locus identifier stored in the genes table.
Old locus tagCN639_09640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUDS01000018.1Sequence record reported by the local genomic context database.
Genomic interval20 908-21 579 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 910-21 579 ntGCF_002555585::NZ_NUDS01000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002555585::NZ_NUDS01000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUDS01000018.1All displayed genes belong to this local TCS context.
Neighborhood span19 910-21 579 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 910 nt21 579 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN639_RS09630GCF_002555585#CN639_RS09630
HKClassic
19 910-20 911 nt · Reverse (-)
CN639_RS09635GCF_002555585#CN639_RS09635
RROmpRCurrent focus
20 908-21 579 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002555585#CN639_RS09635The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1597531
Simplified PFAM architecture for RROC_1597531
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1597531
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_002555585#CN639_RS09635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002555585
AssemblyASM255558v1 · Scaffoldhaploid
Genome composition6 139 271 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 129 · HK 72 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key