1 GAF#1
23-163 aa · 141 aa · 21.1% of protein
Raw token
GAF:23:0.0000000000000021:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN639_RS09015
Histidine kinase, Classic
Bacillus toyonensis · GCF_002555585
ClassHKTypeClassicLength669 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002555585#CN639_RS09015Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_4HisKAHATPase_c
Protein length669 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage398 / 669 aa (59.5%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa669 aa
Domain-by-domain annotation4 items
2 PAS_4#2
341-441 aa · 101 aa · 15.1% of protein
Raw token
PAS_4:341:0.000000117:441:113:1103 HisKA#3
456-513 aa · 58 aa · 8.7% of protein
Raw token
HisKA:456:0.000000000000031:513:58:644 HATPase_c#4
565-662 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:565:2.17e-19:662:103:109- Raw architecture: GAF:23:0.0000000000000021:163:143:133#PAS_4:341:0.000000117:441:113:110#HisKA:456:0.000000000000031:513:58:64#HATPase_c:565:2.17e-19:662:103:109
- Domain description: 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002555585::NZ_NUDS01000015.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span79543-81552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN639_09020RefSeq proteinWP_000947551.1
Context group ID
GCF_002555585::NZ_NUDS01000015.1::G00014Context members
CN639_RS09015
Partner locus tags
CN639_RS09015
Partner old locus tags
CN639_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000947551.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36T6A6Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36T6A6_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN639_RS09015Primary locus identifier stored in the genes table.
Old locus tagCN639_09020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUDS01000015.1Sequence record reported by the local genomic context database.
Genomic interval79 543-81 552 nt2 010 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 543-81 552 ntGCF_002555585::NZ_NUDS01000015.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002555585::NZ_NUDS01000015.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUDS01000015.1All displayed genes belong to this local TCS context.
Neighborhood span79 543-81 552 nt2 010 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 543 nt81 552 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CN639_RS09015GCF_002555585#CN639_RS09015
HKClassicCurrent focus
79 543-81 552 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS25415Use this link to inspect the representative gene detail.
PFAM architectureGAF + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0848479
Simplified PFAM architecture for HKOC_0848479
PFAM domain coverage: 400 / 669 aa (59.8%)
1 aa669 aa
GAFPAS_4HisKAHATPase_c
- Simplified architecture: GAF + PAS_4 + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | PAS_4[341-440] | HisKA[456-513] | HATPase_c[562-663]
- Domain count: 4
- Matched identifier: HKOC_0848479
- Positioned domains: GAF 24-163 ; PAS_4 341-440 ; HisKA 456-513 ; HATPase_c 562-663
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS25415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002555585
AssemblyASM255558v1 · Scaffoldhaploid
Genome composition6 139 271 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 129 · HK 72 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key