1 HAMP#1
133-200 aa · 68 aa · 16.0% of protein
Raw token
HAMP:133:1.8e-16:200:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN639_RS04230
Histidine kinase, Classic
Bacillus toyonensis · GCF_002555585
ClassHKTypeClassicLength426 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002555585#CN639_RS04230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length426 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 426 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa426 aa
Domain-by-domain annotation3 items
2 HisKA#2
212-271 aa · 60 aa · 14.1% of protein
Raw token
HisKA:212:0.000000000000379:271:61:643 HATPase_c#3
317-416 aa · 100 aa · 23.5% of protein
Raw token
HATPase_c:317:1.14e-16:416:103:109- Raw architecture: HAMP:133:1.8e-16:200:68:69#HisKA:212:0.000000000000379:271:61:64#HATPase_c:317:1.14e-16:416:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002555585::NZ_NUDS01000008.1::G00077
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1283Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN639_04235RefSeq proteinWP_257131314.1
Context group ID
GCF_002555585::NZ_NUDS01000008.1::G00077Context members
CN639_RS04230
Partner locus tags
CN639_RS04230
Partner old locus tags
CN639_04235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_257131314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN639_RS04230Primary locus identifier stored in the genes table.
Old locus tagCN639_04235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUDS01000008.1Sequence record reported by the local genomic context database.
Genomic interval1-1 283 nt1 283 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 283 ntGCF_002555585::NZ_NUDS01000008.1::G00077
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002555585::NZ_NUDS01000008.1::G00077Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUDS01000008.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 283 nt1 283 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 283 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CN639_RS04230GCF_002555585#CN639_RS04230
HKClassicCurrent focus
1-1 283 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552055#CON55_RS09765Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861542
Simplified PFAM architecture for HKOC_1861542
PFAM domain coverage: 203 / 458 aa (44.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-232] | HisKA[244-303] | HATPase_c[351-442]
- Domain count: 3
- Matched identifier: HKOC_1861542
- Positioned domains: HAMP 182-232 ; HisKA 244-303 ; HATPase_c 351-442
Cluster members and taxonomy
Representative gene: GCF_002552055#CON55_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002555585
AssemblyASM255558v1 · Scaffoldhaploid
Genome composition6 139 271 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 129 · HK 72 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key