1 Response_reg#1
5-98 aa · 94 aa · 70.7% of protein
Raw token
Response_reg:5:1.05e-28:98:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CN611_RS11970
Response regulator, CheY family
Bacillus wiedmannii · GCF_002555385
ClassRRTypeCheYLength133 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002555385#CN611_RS11970Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length133 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage94 / 133 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa133 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.05e-28:98:95:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002555385::NZ_NUDL01000031.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8039-10221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCN611_11970RefSeq proteinWP_064475752.1
Context group ID
GCF_002555385::NZ_NUDL01000031.1::G00041Context members
CN611_RS11970CN611_RS11975
Partner locus tags
CN611_RS11970CN611_RS11975
Partner old locus tags
CN611_11970CN611_11975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064475752.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PTZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PTZ2_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCN611_RS11970Primary locus identifier stored in the genes table.
Old locus tagCN611_11970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NUDL01000031.1Sequence record reported by the local genomic context database.
Genomic interval8 039-8 440 nt402 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 039-10 221 ntGCF_002555385::NZ_NUDL01000031.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002555385::NZ_NUDL01000031.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NUDL01000031.1All displayed genes belong to this local TCS context.
Neighborhood span8 039-10 221 nt2 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 039 nt10 221 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CN611_RS11970GCF_002555385#CN611_RS11970
RRCheYCurrent focus
8 039-8 440 nt · Forward (+)
CN611_RS11975GCF_002555385#CN611_RS11975
HKClassic
8 437-10 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS15320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2302580
Simplified PFAM architecture for RROC_2302580
PFAM domain coverage: 94 / 133 aa (70.7%)
1 aa133 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-98]
- Domain count: 1
- Matched identifier: RROC_2302580
- Positioned domains: Response_reg 5-98 ; Response_reg 5-98
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS15320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002555385
AssemblyASM255538v1 · Scaffoldhaploid
Genome composition6 101 045 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 131 · HK 69 · RR 62CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key