1 HisKA_3#1
184-244 aa · 61 aa · 10.2% of protein
Raw token
HisKA_3:184:0.00000000000000501:244:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS19990
Histidine kinase, Hybrid
Bacillus toyonensis · GCF_002553415
ClassHKTypeHybridLength598 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553415#COO04_RS19990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_cResponse_regHTH_LUXR
Protein length598 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage316 / 598 aa (52.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa598 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
289-376 aa · 88 aa · 14.7% of protein
Raw token
HATPase_c:289:0.000000000000159:376:106:1093 Response_reg#3
386-497 aa · 112 aa · 18.7% of protein
Raw token
Response_reg:386:1.15e-29:497:112:1114 HTH_LUXR#4
534-588 aa · 55 aa · 9.2% of protein
Raw token
HTH_LUXR:534:3.31e-18:588:55:58- Raw architecture: HisKA_3:184:0.00000000000000501:244:63:68#HATPase_c:289:0.000000000000159:376:106:109#Response_reg:386:1.15e-29:497:112:111#HTH_LUXR:534:3.31e-18:588:55:58
- Domain description: 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553415::NZ_NVPH01000032.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span266-2062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_19995RefSeq proteinWP_097954239.1
Context group ID
GCF_002553415::NZ_NVPH01000032.1::G00027Context members
COO04_RS19990
Partner locus tags
COO04_RS19990
Partner old locus tags
COO04_19995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097954239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS19990Primary locus identifier stored in the genes table.
Old locus tagCOO04_19995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000032.1Sequence record reported by the local genomic context database.
Genomic interval266-2 062 nt1 797 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span266-2 062 ntGCF_002553415::NZ_NVPH01000032.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000032.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000032.1All displayed genes belong to this local TCS context.
Neighborhood span266-2 062 nt1 797 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 nt2 062 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COO04_RS19990GCF_002553415#COO04_RS19990
HKHybridCurrent focus
266-2 062 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS19990The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c + Response_reg + GerE4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1063200
Simplified PFAM architecture for HKOC_1063200
PFAM domain coverage: 314 / 598 aa (52.5%)
1 aa598 aa
HisKA_3HATPase_cResponse_regGerE
- Simplified architecture: HisKA_3 + HATPase_c + Response_reg + GerE
- Raw architecture: HisKA_3[184-245] | HATPase_c[290-375] | Response_reg[386-496] | GerE[534-588]
- Domain count: 4
- Matched identifier: HKOC_1063200
- Positioned domains: HisKA_3 184-245 ; HATPase_c 290-375 ; Response_reg 386-496 ; GerE 534-588
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS19990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key