1 HisKA#1
286-348 aa · 63 aa · 12.7% of protein
Raw token
HisKA:286:0.0000000000000143:348:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS19610
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553415#COO04_RS19610Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 498 aa (33.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
394-495 aa · 102 aa · 20.5% of protein
Raw token
HATPase_c:394:8.31e-29:495:105:109- Raw architecture: HisKA:286:0.0000000000000143:348:63:64#HATPase_c:394:8.31e-29:495:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553415::NZ_NVPH01000029.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span48334-49830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_19615RefSeq proteinWP_087949129.1
Context group ID
GCF_002553415::NZ_NVPH01000029.1::G00024Context members
COO04_RS19610
Partner locus tags
COO04_RS19610
Partner old locus tags
COO04_19615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_087949129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS19610Primary locus identifier stored in the genes table.
Old locus tagCOO04_19615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000029.1Sequence record reported by the local genomic context database.
Genomic interval48 334-49 830 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 334-49 830 ntGCF_002553415::NZ_NVPH01000029.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000029.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000029.1All displayed genes belong to this local TCS context.
Neighborhood span48 334-49 830 nt1 497 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 334 nt49 830 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COO04_RS19610GCF_002553415#COO04_RS19610
HKClassicCurrent focus
48 334-49 830 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS19610The current gene is the representative for this cluster.
PFAM architectureDUF3149 + dCache_1 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1488079
Simplified PFAM architecture for HKOC_1488079
PFAM domain coverage: 353 / 498 aa (70.9%)
1 aa498 aa
DUF3149dCache_1HisKAHATPase_c
- Simplified architecture: DUF3149 + dCache_1 + HisKA + HATPase_c
- Raw architecture: DUF3149[9-38] | dCache_1[50-207] | HisKA[286-346] | HATPase_c[393-496]
- Domain count: 4
- Matched identifier: HKOC_1488079
- Positioned domains: DUF3149 9-38 ; dCache_1 50-207 ; HisKA 286-346 ; HATPase_c 393-496
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS19610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key