1 HisKA_3#1
177-240 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:177:7.77e-24:240:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS18040
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS18040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 375 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-366 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:281:0.000000000689:366:104:109- Raw architecture: HisKA_3:177:7.77e-24:240:64:68#HATPase_c:281:0.000000000689:366:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000024.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153839-155565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_18050RefSeq proteinWP_097954086.1
Context group ID
GCF_002553415::NZ_NVPH01000024.1::G00018Context members
COO04_RS18040COO04_RS18045
Partner locus tags
COO04_RS18040COO04_RS18045
Partner old locus tags
COO04_18050COO04_18055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097954086.1Primary protein accession used for annex mappings.
UniProt accessionA0AB73S8V2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB73S8V2_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS18040Primary locus identifier stored in the genes table.
Old locus tagCOO04_18050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000024.1Sequence record reported by the local genomic context database.
Genomic interval153 839-154 966 nt1 128 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 839-155 565 ntGCF_002553415::NZ_NVPH01000024.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000024.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000024.1All displayed genes belong to this local TCS context.
Neighborhood span153 839-155 565 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 839 nt155 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS18040GCF_002553415#COO04_RS18040
HKClassicCurrent focus
153 839-154 966 nt · Forward (+)
COO04_RS18045GCF_002553415#COO04_RS18045
RRNarL
154 963-155 565 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS18040The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2650629
Simplified PFAM architecture for HKOC_2650629
PFAM domain coverage: 293 / 375 aa (78.1%)
1 aa375 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-147] | HisKA_3[177-240] | HATPase_c[279-363]
- Domain count: 3
- Matched identifier: HKOC_2650629
- Positioned domains: DesK_N 4-147 ; HisKA_3 177-240 ; HATPase_c 279-363
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS18040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key