1 GAF#1
23-163 aa · 141 aa · 21.0% of protein
Raw token
GAF:23:0.00000000000000191:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS15390
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553415#COO04_RS15390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_4HisKAHATPase_c
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage398 / 672 aa (59.2%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation4 items
2 PAS_4#2
344-444 aa · 101 aa · 15.0% of protein
Raw token
PAS_4:344:0.0000000859:444:113:1103 HisKA#3
459-516 aa · 58 aa · 8.6% of protein
Raw token
HisKA:459:0.0000000000000271:516:58:644 HATPase_c#4
568-665 aa · 98 aa · 14.6% of protein
Raw token
HATPase_c:568:1.94e-19:665:103:109- Raw architecture: GAF:23:0.00000000000000191:163:143:133#PAS_4:344:0.0000000859:444:113:110#HisKA:459:0.0000000000000271:516:58:64#HATPase_c:568:1.94e-19:665:103:109
- Domain description: 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553415::NZ_NVPH01000021.1::G00012
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span50917-52935Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_15395RefSeq proteinWP_097953922.1
Context group ID
GCF_002553415::NZ_NVPH01000021.1::G00012Context members
COO04_RS15390
Partner locus tags
COO04_RS15390
Partner old locus tags
COO04_15395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097953922.1Primary protein accession used for annex mappings.
UniProt accessionA0AB73S900Primary UniProt accession resolved in the annex database.
UniProt IDA0AB73S900_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS15390Primary locus identifier stored in the genes table.
Old locus tagCOO04_15395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000021.1Sequence record reported by the local genomic context database.
Genomic interval50 917-52 935 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 917-52 935 ntGCF_002553415::NZ_NVPH01000021.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000021.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000021.1All displayed genes belong to this local TCS context.
Neighborhood span50 917-52 935 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 917 nt52 935 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COO04_RS15390GCF_002553415#COO04_RS15390
HKClassicCurrent focus
50 917-52 935 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS15390The current gene is the representative for this cluster.
PFAM architectureGAF + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0839696
Simplified PFAM architecture for HKOC_0839696
PFAM domain coverage: 400 / 672 aa (59.5%)
1 aa672 aa
GAFPAS_4HisKAHATPase_c
- Simplified architecture: GAF + PAS_4 + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | PAS_4[344-443] | HisKA[459-516] | HATPase_c[565-666]
- Domain count: 4
- Matched identifier: HKOC_0839696
- Positioned domains: GAF 24-163 ; PAS_4 344-443 ; HisKA 459-516 ; HATPase_c 565-666
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS15390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key