1 HAMP#1
168-237 aa · 70 aa · 14.4% of protein
Raw token
HAMP:168:0.00000000000000276:237:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS14580
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS14580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 487 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-327 aa · 66 aa · 13.6% of protein
Raw token
HisKA:262:0.000000000000365:327:66:643 HATPase_c#3
373-486 aa · 114 aa · 23.4% of protein
Raw token
HATPase_c:373:1.4e-19:486:116:109- Raw architecture: HAMP:168:0.00000000000000276:237:70:69#HisKA:262:0.000000000000365:327:66:64#HATPase_c:373:1.4e-19:486:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000019.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31550-33692Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_14585RefSeq proteinWP_097953866.1
Context group ID
GCF_002553415::NZ_NVPH01000019.1::G00010Context members
COO04_RS14575COO04_RS14580
Partner locus tags
COO04_RS14575COO04_RS14580
Partner old locus tags
COO04_14580COO04_14585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097953866.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS14580Primary locus identifier stored in the genes table.
Old locus tagCOO04_14585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000019.1Sequence record reported by the local genomic context database.
Genomic interval32 229-33 692 nt1 464 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 550-33 692 ntGCF_002553415::NZ_NVPH01000019.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000019.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000019.1All displayed genes belong to this local TCS context.
Neighborhood span31 550-33 692 nt2 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 550 nt33 692 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS14575GCF_002553415#COO04_RS14575
RROmpR
31 550-32 215 nt · Forward (+)
COO04_RS14580GCF_002553415#COO04_RS14580
HKClassicCurrent focus
32 229-33 692 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS14580The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1560887
Simplified PFAM architecture for HKOC_1560887
PFAM domain coverage: 229 / 487 aa (47.0%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-237] | HisKA[263-327] | HATPase_c[374-485]
- Domain count: 3
- Matched identifier: HKOC_1560887
- Positioned domains: HAMP 186-237 ; HisKA 263-327 ; HATPase_c 374-485
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS14580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key