1 PAS_8#1
32-87 aa · 56 aa · 11.0% of protein
Raw token
PAS_8:32:0.00000000134:87:56:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS13415
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553415#COO04_RS13415Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_8PAS_4HisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage337 / 510 aa (66.1%)Merged over positioned domains only.
Domain description1 PAS_8,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation4 items
2 PAS_4#2
163-277 aa · 115 aa · 22.5% of protein
Raw token
PAS_4:163:1.32e-17:277:115:1103 HisKA#3
292-352 aa · 61 aa · 12.0% of protein
Raw token
HisKA:292:0.000000000000774:352:61:644 HATPase_c#4
397-501 aa · 105 aa · 20.6% of protein
Raw token
HATPase_c:397:5.73e-27:501:108:109- Raw architecture: PAS_8:32:0.00000000134:87:56:65#PAS_4:163:1.32e-17:277:115:110#HisKA:292:0.000000000000774:352:61:64#HATPase_c:397:5.73e-27:501:108:109
- Domain description: 1 PAS_8,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553415::NZ_NVPH01000016.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span123479-125011Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_13420RefSeq proteinWP_097953701.1
Context group ID
GCF_002553415::NZ_NVPH01000016.1::G00009Context members
COO04_RS13415
Partner locus tags
COO04_RS13415
Partner old locus tags
COO04_13420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097953701.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B6B5S8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B6B5S8_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS13415Primary locus identifier stored in the genes table.
Old locus tagCOO04_13420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000016.1Sequence record reported by the local genomic context database.
Genomic interval123 479-125 011 nt1 533 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 479-125 011 ntGCF_002553415::NZ_NVPH01000016.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000016.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000016.1All displayed genes belong to this local TCS context.
Neighborhood span123 479-125 011 nt1 533 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 479 nt125 011 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COO04_RS13415GCF_002553415#COO04_RS13415
HKClassicCurrent focus
123 479-125 011 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS13415The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1428896
Simplified PFAM architecture for HKOC_1428896
PFAM domain coverage: 376 / 510 aa (73.7%)
1 aa510 aa
PAS_9PAS_4HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_9[42-137] | PAS_4[163-276] | HisKA[292-351] | HATPase_c[397-502]
- Domain count: 4
- Matched identifier: HKOC_1428896
- Positioned domains: PAS_9 42-137 ; PAS_4 163-276 ; HisKA 292-351 ; HATPase_c 397-502
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS13415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key