1 HisKA#1
116-169 aa · 54 aa · 15.9% of protein
Raw token
HisKA:116:0.00000563:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS11835
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS11835Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 340 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa340 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
216-323 aa · 108 aa · 31.8% of protein
Raw token
HATPase_c:216:2.01e-27:323:108:109- Raw architecture: HisKA:116:0.00000563:169:59:64#HATPase_c:216:2.01e-27:323:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000014.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96217-97937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_11840RefSeq proteinWP_000765359.1
Context group ID
GCF_002553415::NZ_NVPH01000014.1::G00005Context members
COO04_RS11830COO04_RS11835
Partner locus tags
COO04_RS11830COO04_RS11835
Partner old locus tags
COO04_11835COO04_11840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000765359.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B6P3T0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B6P3T0_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS11835Primary locus identifier stored in the genes table.
Old locus tagCOO04_11840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000014.1Sequence record reported by the local genomic context database.
Genomic interval96 915-97 937 nt1 023 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 217-97 937 ntGCF_002553415::NZ_NVPH01000014.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000014.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000014.1All displayed genes belong to this local TCS context.
Neighborhood span96 217-97 937 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 217 nt97 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS11830GCF_002553415#COO04_RS11830
RROmpR
96 217-96 912 nt · Forward (+)
COO04_RS11835GCF_002553415#COO04_RS11835
HKClassicCurrent focus
96 915-97 937 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS03445Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2836552
Simplified PFAM architecture for HKOC_2836552
PFAM domain coverage: 108 / 340 aa (31.8%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-323]
- Domain count: 1
- Matched identifier: HKOC_2836552
- Positioned domains: HATPase_c 216-323
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key