1 GAF#1
19-160 aa · 142 aa · 38.9% of protein
Raw token
GAF:19:0.000000000481:160:144:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS10885
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS10885Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 365 aa (82.5%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
177-242 aa · 66 aa · 18.1% of protein
Raw token
HisKA_3:177:6.14e-17:242:68:683 HATPase_c#3
272-364 aa · 93 aa · 25.5% of protein
Raw token
HATPase_c:272:0.00000000000000793:364:108:109- Raw architecture: GAF:19:0.000000000481:160:144:133#HisKA_3:177:6.14e-17:242:68:68#HATPase_c:272:0.00000000000000793:364:108:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000012.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118276-120023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_10890RefSeq proteinWP_286675689.1
Context group ID
GCF_002553415::NZ_NVPH01000012.1::G00002Context members
COO04_RS10880COO04_RS10885
Partner locus tags
COO04_RS10880COO04_RS10885
Partner old locus tags
COO04_10885COO04_10890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286675689.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS10885Primary locus identifier stored in the genes table.
Old locus tagCOO04_10890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000012.1Sequence record reported by the local genomic context database.
Genomic interval118 926-120 023 nt1 098 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 276-120 023 ntGCF_002553415::NZ_NVPH01000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000012.1All displayed genes belong to this local TCS context.
Neighborhood span118 276-120 023 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 276 nt120 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS10880GCF_002553415#COO04_RS10880
RRNarL
118 276-118 911 nt · Reverse (-)
COO04_RS10885GCF_002553415#COO04_RS10885
HKClassicCurrent focus
118 926-120 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS10885The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719612
Simplified PFAM architecture for HKOC_2719612
PFAM domain coverage: 297 / 365 aa (81.4%)
1 aa365 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[17-161] | HisKA_3[177-241] | HATPase_c[278-364]
- Domain count: 3
- Matched identifier: HKOC_2719612
- Positioned domains: GAF_2 17-161 ; HisKA_3 177-241 ; HATPase_c 278-364
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS10885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key