1 HisKA#1
221-281 aa · 61 aa · 14.1% of protein
Raw token
HisKA:221:1.76e-16:281:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS03105
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength433 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553415#COO04_RS03105Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length433 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 433 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa433 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-431 aa · 107 aa · 24.7% of protein
Raw token
HATPase_c:325:2.94e-22:431:110:109- Raw architecture: HisKA:221:1.76e-16:281:61:64#HATPase_c:325:2.94e-22:431:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553415::NZ_NVPH01000004.1::G00056
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span220339-221640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_03105RefSeq proteinWP_141499464.1
Context group ID
GCF_002553415::NZ_NVPH01000004.1::G00056Context members
COO04_RS03105
Partner locus tags
COO04_RS03105
Partner old locus tags
COO04_03105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141499464.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS03105Primary locus identifier stored in the genes table.
Old locus tagCOO04_03105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000004.1Sequence record reported by the local genomic context database.
Genomic interval220 339-221 640 nt1 302 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span220 339-221 640 ntGCF_002553415::NZ_NVPH01000004.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000004.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span220 339-221 640 nt1 302 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 339 nt221 640 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COO04_RS03105GCF_002553415#COO04_RS03105
HKClassicCurrent focus
220 339-221 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS03105The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2142478
Simplified PFAM architecture for HKOC_2142478
PFAM domain coverage: 324 / 433 aa (74.8%)
1 aa433 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[38-194] | HisKA[221-282] | HATPase_c[326-430]
- Domain count: 3
- Matched identifier: HKOC_2142478
- Positioned domains: 5TM-5TMR_LYT 38-194 ; HisKA 221-282 ; HATPase_c 326-430
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS03105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key