1 HAMP#1
171-241 aa · 71 aa · 15.1% of protein
Raw token
HAMP:171:0.0000000000986:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS03080
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength471 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS03080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length471 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 471 aa (52.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa471 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:0.000000000000007:312:68:643 HATPase_c#3
362-467 aa · 106 aa · 22.5% of protein
Raw token
HATPase_c:362:2.69e-27:467:106:109- Raw architecture: HAMP:171:0.0000000000986:241:71:69#HisKA:245:0.000000000000007:312:68:64#HATPase_c:362:2.69e-27:467:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000004.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216032-218118Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_03080RefSeq proteinWP_097952662.1
Context group ID
GCF_002553415::NZ_NVPH01000004.1::G00055Context members
COO04_RS03080COO04_RS03085
Partner locus tags
COO04_RS03080COO04_RS03085
Partner old locus tags
COO04_03080COO04_03085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097952662.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS03080Primary locus identifier stored in the genes table.
Old locus tagCOO04_03080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000004.1Sequence record reported by the local genomic context database.
Genomic interval216 032-217 447 nt1 416 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 032-218 118 ntGCF_002553415::NZ_NVPH01000004.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000004.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span216 032-218 118 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 032 nt218 118 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS03080GCF_002553415#COO04_RS03080
HKClassicCurrent focus
216 032-217 447 nt · Reverse (-)
COO04_RS03085GCF_002553415#COO04_RS03085
RROmpR
217 444-218 118 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS03080The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1709025
Simplified PFAM architecture for HKOC_1709025
PFAM domain coverage: 351 / 471 aa (74.5%)
1 aa471 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-467]
- Domain count: 4
- Matched identifier: HKOC_1709025
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-467
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS03080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key