1 HAMP#1
165-234 aa · 70 aa · 15.3% of protein
Raw token
HAMP:165:1.86e-16:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COO04_RS00430
Histidine kinase, Classic
Bacillus toyonensis · GCF_002553415
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553415#COO04_RS00430Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 458 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.6% of protein
Raw token
HisKA:238:0.00000000000000185:304:67:643 HATPase_c#3
348-457 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:348:9.28e-34:457:110:109- Raw architecture: HAMP:165:1.86e-16:234:70:69#HisKA:238:0.00000000000000185:304:67:64#HATPase_c:348:9.28e-34:457:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553415::NZ_NVPH01000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59814-61869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOO04_00430RefSeq proteinWP_097952218.1
Context group ID
GCF_002553415::NZ_NVPH01000002.1::G00026Context members
COO04_RS00430COO04_RS00435
Partner locus tags
COO04_RS00430COO04_RS00435
Partner old locus tags
COO04_00430COO04_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097952218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOO04_RS00430Primary locus identifier stored in the genes table.
Old locus tagCOO04_00430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVPH01000002.1Sequence record reported by the local genomic context database.
Genomic interval59 814-61 190 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 814-61 869 ntGCF_002553415::NZ_NVPH01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553415::NZ_NVPH01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVPH01000002.1All displayed genes belong to this local TCS context.
Neighborhood span59 814-61 869 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 814 nt61 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COO04_RS00430GCF_002553415#COO04_RS00430
HKClassicCurrent focus
59 814-61 190 nt · Reverse (-)
COO04_RS00435GCF_002553415#COO04_RS00435
RROmpR
61 192-61 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553415#COO04_RS00430The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861563
Simplified PFAM architecture for HKOC_1861563
PFAM domain coverage: 226 / 458 aa (49.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-303] | HATPase_c[348-457]
- Domain count: 3
- Matched identifier: HKOC_1861563
- Positioned domains: HAMP 184-233 ; HisKA 238-303 ; HATPase_c 348-457
Cluster members and taxonomy
Representative gene: GCF_002553415#COO04_RS00430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002553415
AssemblyASM255341v1 · Scaffoldhaploid
Genome composition5 960 659 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 133 · HK 73 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key