1 HAMP#1
49-118 aa · 70 aa · 19.9% of protein
Raw token
HAMP:49:0.0000000000051:118:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON72_RS13865
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002553125
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002553125#CON72_RS13865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 351 aa (64.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation3 items
2 HisKA#2
129-191 aa · 63 aa · 17.9% of protein
Raw token
HisKA:129:0.0000000000000896:191:63:643 HATPase_c#3
243-336 aa · 94 aa · 26.8% of protein
Raw token
HATPase_c:243:7.1e-17:336:94:109- Raw architecture: HAMP:49:0.0000000000051:118:70:69#HisKA:129:0.0000000000000896:191:63:64#HATPase_c:243:7.1e-17:336:94:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002553125::NZ_NVOK01000129.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span946-2001Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON72_13865RefSeq proteinWP_097907433.1
Context group ID
GCF_002553125::NZ_NVOK01000129.1::G00005Context members
CON72_RS13865
Partner locus tags
CON72_RS13865
Partner old locus tags
CON72_13865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097907433.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON72_RS13865Primary locus identifier stored in the genes table.
Old locus tagCON72_13865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOK01000129.1Sequence record reported by the local genomic context database.
Genomic interval946-2 001 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span946-2 001 ntGCF_002553125::NZ_NVOK01000129.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553125::NZ_NVOK01000129.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOK01000129.1All displayed genes belong to this local TCS context.
Neighborhood span946-2 001 nt1 056 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
946 nt2 001 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CON72_RS13865GCF_002553125#CON72_RS13865
HKClassicCurrent focus
946-2 001 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002553125#CON72_RS13865The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2793478
Simplified PFAM architecture for HKOC_2793478
PFAM domain coverage: 205 / 351 aa (58.4%)
1 aa351 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-118] | HisKA[130-191] | HATPase_c[243-339]
- Domain count: 3
- Matched identifier: HKOC_2793478
- Positioned domains: HAMP 73-118 ; HisKA 130-191 ; HATPase_c 243-339
Cluster members and taxonomy
Representative gene: GCF_002553125#CON72_RS13865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002553125
AssemblyASM255312v1 · Scaffoldhaploid
Genome composition5 526 157 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 100 · HK 52 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key