1 Response_reg#1
5-117 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:5:3.89e-34:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON72_RS00855
Response regulator NarL family
Bacillus wiedmannii · GCF_002553125
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002553125#CON72_RS00855Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 215 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-209 aa · 57 aa · 26.5% of protein
Raw token
HTH_LUXR:153:7.16e-24:209:57:58- Raw architecture: Response_reg:5:3.89e-34:117:113:111#HTH_LUXR:153:7.16e-24:209:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002553125::NZ_NVOK01000007.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1482-3721Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON72_00855RefSeq proteinWP_088065061.1
Context group ID
GCF_002553125::NZ_NVOK01000007.1::G00057Context members
CON72_RS00855CON72_RS00860
Partner locus tags
CON72_RS00855CON72_RS00860
Partner old locus tags
CON72_00855CON72_00860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088065061.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON72_RS00855Primary locus identifier stored in the genes table.
Old locus tagCON72_00855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOK01000007.1Sequence record reported by the local genomic context database.
Genomic interval1 482-2 129 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 482-3 721 ntGCF_002553125::NZ_NVOK01000007.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002553125::NZ_NVOK01000007.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOK01000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 482-3 721 nt2 240 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 482 nt3 721 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON72_RS00855GCF_002553125#CON72_RS00855
RRNarLCurrent focus
1 482-2 129 nt · Reverse (-)
CON72_RS00860GCF_002553125#CON72_RS00860
HKClassic
2 150-3 721 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002209985#CER22_RS03720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1911579
Simplified PFAM architecture for RROC_1911579
PFAM domain coverage: 170 / 215 aa (79.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-117] | GerE[153-209]
- Domain count: 2
- Matched identifier: RROC_1911579
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GerE 153-209 ; GerE 153-209
Cluster members and taxonomy
Representative gene: GCF_002209985#CER22_RS03720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002553125
AssemblyASM255312v1 · Scaffoldhaploid
Genome composition5 526 157 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 100 · HK 52 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key