1 HAMP#1
173-242 aa · 70 aa · 14.2% of protein
Raw token
HAMP:173:0.00000000000000421:242:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON01_RS01455
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002552395
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552395#CON01_RS01455Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 492 aa (50.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-332 aa · 66 aa · 13.4% of protein
Raw token
HisKA:267:0.0000000000000622:332:66:643 HATPase_c#3
378-489 aa · 112 aa · 22.8% of protein
Raw token
HATPase_c:378:1.98e-18:489:113:109- Raw architecture: HAMP:173:0.00000000000000421:242:70:69#HisKA:267:0.0000000000000622:332:66:64#HATPase_c:378:1.98e-18:489:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552395::NZ_NVMD01000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8637-10794Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON01_01455RefSeq proteinWP_205729171.1
Context group ID
GCF_002552395::NZ_NVMD01000004.1::G00038Context members
CON01_RS01455CON01_RS01460
Partner locus tags
CON01_RS01455CON01_RS01460
Partner old locus tags
CON01_01455CON01_01460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_205729171.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON01_RS01455Primary locus identifier stored in the genes table.
Old locus tagCON01_01455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMD01000004.1Sequence record reported by the local genomic context database.
Genomic interval8 637-10 115 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 637-10 794 ntGCF_002552395::NZ_NVMD01000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552395::NZ_NVMD01000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span8 637-10 794 nt2 158 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 637 nt10 794 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON01_RS01455GCF_002552395#CON01_RS01455
HKClassicCurrent focus
8 637-10 115 nt · Reverse (-)
CON01_RS01460GCF_002552395#CON01_RS01460
RROmpR
10 129-10 794 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552395#CON01_RS01455The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1522036
Simplified PFAM architecture for HKOC_1522036
PFAM domain coverage: 229 / 492 aa (46.5%)
1 aa492 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[268-332] | HATPase_c[379-490]
- Domain count: 3
- Matched identifier: HKOC_1522036
- Positioned domains: HAMP 191-242 ; HisKA 268-332 ; HATPase_c 379-490
Cluster members and taxonomy
Representative gene: GCF_002552395#CON01_RS01455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002552395
AssemblyASM255239v1 · Scaffoldhaploid
Genome composition6 302 729 bp · 34,5% GCBacillus thuringiensis
Signal transduction countsGenes 125 · HK 67 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key