1 HAMP#1
50-129 aa · 80 aa · 22.4% of protein
Raw token
HAMP:50:0.00000000412:129:80:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON91_RS04985
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002552205
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552205#CON91_RS04985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 357 aa (72.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.000000000000289:199:67:643 HATPase_c#3
243-352 aa · 110 aa · 30.8% of protein
Raw token
HATPase_c:243:8.62e-32:352:110:109- Raw architecture: HAMP:50:0.00000000412:129:80:69#HisKA:133:0.000000000000289:199:67:64#HATPase_c:243:8.62e-32:352:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552205::NZ_NVOA01000004.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247239-248986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON91_04985RefSeq proteinWP_097889402.1
Context group ID
GCF_002552205::NZ_NVOA01000004.1::G00061Context members
CON91_RS04980CON91_RS04985
Partner locus tags
CON91_RS04980CON91_RS04985
Partner old locus tags
CON91_04980CON91_04985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097889402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON91_RS04985Primary locus identifier stored in the genes table.
Old locus tagCON91_04985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOA01000004.1Sequence record reported by the local genomic context database.
Genomic interval247 913-248 986 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span247 239-248 986 ntGCF_002552205::NZ_NVOA01000004.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552205::NZ_NVOA01000004.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span247 239-248 986 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 239 nt248 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON91_RS04980GCF_002552205#CON91_RS04980
RROmpR
247 239-247 916 nt · Forward (+)
CON91_RS04985GCF_002552205#CON91_RS04985
HKClassicCurrent focus
247 913-248 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552205#CON91_RS04985The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2766171
Simplified PFAM architecture for HKOC_2766171
PFAM domain coverage: 217 / 357 aa (60.8%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[88-128] | HisKA[133-198] | HATPase_c[244-353]
- Domain count: 3
- Matched identifier: HKOC_2766171
- Positioned domains: HAMP 88-128 ; HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_002552205#CON91_RS04985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002552205
AssemblyASM255220v1 · Scaffoldhaploid
Genome composition6 127 360 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 128 · HK 67 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key