1 HAMP#1
50-119 aa · 70 aa · 19.7% of protein
Raw token
HAMP:50:0.000000000000173:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON91_RS04500
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002552205
ClassHKTypeClassicLength355 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552205#CON91_RS04500Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 355 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.5% of protein
Raw token
HisKA:130:0.000000000000876:191:62:643 HATPase_c#3
242-350 aa · 109 aa · 30.7% of protein
Raw token
HATPase_c:242:9.75e-22:350:110:109- Raw architecture: HAMP:50:0.000000000000173:119:70:69#HisKA:130:0.000000000000876:191:62:64#HATPase_c:242:9.75e-22:350:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552205::NZ_NVOA01000004.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140734-142489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON91_04500RefSeq proteinWP_141542721.1
Context group ID
GCF_002552205::NZ_NVOA01000004.1::G00060Context members
CON91_RS04495CON91_RS04500
Partner locus tags
CON91_RS04495CON91_RS04500
Partner old locus tags
CON91_04495CON91_04500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_141542721.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON91_RS04500Primary locus identifier stored in the genes table.
Old locus tagCON91_04500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOA01000004.1Sequence record reported by the local genomic context database.
Genomic interval141 422-142 489 nt1 068 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span140 734-142 489 ntGCF_002552205::NZ_NVOA01000004.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552205::NZ_NVOA01000004.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span140 734-142 489 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 734 nt142 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON91_RS04495GCF_002552205#CON91_RS04495
RROmpR
140 734-141 432 nt · Forward (+)
CON91_RS04500GCF_002552205#CON91_RS04500
HKClassicCurrent focus
141 422-142 489 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552205#CON91_RS04500The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2775877
Simplified PFAM architecture for HKOC_2775877
PFAM domain coverage: 225 / 355 aa (63.4%)
1 aa355 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-193] | HATPase_c[244-351]
- Domain count: 3
- Matched identifier: HKOC_2775877
- Positioned domains: HAMP 67-119 ; HisKA 130-193 ; HATPase_c 244-351
Cluster members and taxonomy
Representative gene: GCF_002552205#CON91_RS04500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002552205
AssemblyASM255220v1 · Scaffoldhaploid
Genome composition6 127 360 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 128 · HK 67 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key