1 HAMP#1
188-258 aa · 71 aa · 14.3% of protein
Raw token
HAMP:188:2.12e-17:258:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON91_RS04355
Histidine kinase, Classic
Bacillus wiedmannii · GCF_002552205
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002552205#CON91_RS04355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 496 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation3 items
2 HisKA#2
270-334 aa · 65 aa · 13.1% of protein
Raw token
HisKA:270:0.0000000000000154:334:65:643 HATPase_c#3
383-492 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:383:2.22e-30:492:110:109- Raw architecture: HAMP:188:2.12e-17:258:71:69#HisKA:270:0.0000000000000154:334:65:64#HATPase_c:383:2.22e-30:492:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002552205::NZ_NVOA01000004.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111320-113515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON91_04355RefSeq proteinWP_097889363.1
Context group ID
GCF_002552205::NZ_NVOA01000004.1::G00059Context members
CON91_RS04355CON91_RS04360
Partner locus tags
CON91_RS04355CON91_RS04360
Partner old locus tags
CON91_04355CON91_04360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097889363.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON91_RS04355Primary locus identifier stored in the genes table.
Old locus tagCON91_04355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOA01000004.1Sequence record reported by the local genomic context database.
Genomic interval111 320-112 810 nt1 491 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 320-113 515 ntGCF_002552205::NZ_NVOA01000004.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552205::NZ_NVOA01000004.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span111 320-113 515 nt2 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 320 nt113 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON91_RS04355GCF_002552205#CON91_RS04355
HKClassicCurrent focus
111 320-112 810 nt · Forward (+)
CON91_RS04360GCF_002552205#CON91_RS04360
RROmpR
112 826-113 515 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002552205#CON91_RS04355The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1499706
Simplified PFAM architecture for HKOC_1499706
PFAM domain coverage: 229 / 496 aa (46.2%)
1 aa496 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[206-258] | HisKA[270-334] | HATPase_c[383-493]
- Domain count: 3
- Matched identifier: HKOC_1499706
- Positioned domains: HAMP 206-258 ; HisKA 270-334 ; HATPase_c 383-493
Cluster members and taxonomy
Representative gene: GCF_002552205#CON91_RS04355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002552205
AssemblyASM255220v1 · Scaffoldhaploid
Genome composition6 127 360 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 128 · HK 67 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key