1 Response_reg#1
5-115 aa · 111 aa · 35.8% of protein
Raw token
Response_reg:5:3.9e-20:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON91_RS04135
Response regulator, unclassified
Bacillus wiedmannii · GCF_002552205
ClassRRTypeunclassifiedLength310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002552205#CON91_RS04135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage252 / 310 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation2 items
2 YcbB#2
159-299 aa · 141 aa · 45.5% of protein
Raw token
YcbB:159:4.69e-62:299:141:131- Raw architecture: Response_reg:5:3.9e-20:115:113:111#YcbB:159:4.69e-62:299:141:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002552205::NZ_NVOA01000004.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span65699-66631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON91_04135RefSeq proteinWP_048543316.1
Context group ID
GCF_002552205::NZ_NVOA01000004.1::G00058Context members
CON91_RS04135
Partner locus tags
CON91_RS04135
Partner old locus tags
CON91_04135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048543316.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B5IZS0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B5IZS0_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON91_RS04135Primary locus identifier stored in the genes table.
Old locus tagCON91_04135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVOA01000004.1Sequence record reported by the local genomic context database.
Genomic interval65 699-66 631 nt933 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 699-66 631 ntGCF_002552205::NZ_NVOA01000004.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002552205::NZ_NVOA01000004.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVOA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span65 699-66 631 nt933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 699 nt66 631 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CON91_RS04135GCF_002552205#CON91_RS04135
RRunclassifiedCurrent focus
65 699-66 631 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044745#TU65_RS11510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0552290
Simplified PFAM architecture for RROC_0552290
PFAM domain coverage: 250 / 310 aa (80.6%)
1 aa310 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-114] | YcbB[160-299]
- Domain count: 2
- Matched identifier: RROC_0552290
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; YcbB 160-299 ; YcbB 160-299
Cluster members and taxonomy
Representative gene: GCF_001044745#TU65_RS11510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_002552205
AssemblyASM255220v1 · Scaffoldhaploid
Genome composition6 127 360 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 128 · HK 67 · RR 60CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key