1 HAMP#1
111-180 aa · 70 aa · 17.0% of protein
Raw token
HAMP:111:0.00000734:180:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON29_RS21240
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550605
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550605#CON29_RS21240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 411 aa (58.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation3 items
2 HisKA#2
192-256 aa · 65 aa · 15.8% of protein
Raw token
HisKA:192:0.00000000000124:256:65:643 HATPase_c#3
303-408 aa · 106 aa · 25.8% of protein
Raw token
HATPase_c:303:1.24e-24:408:106:109- Raw architecture: HAMP:111:0.00000734:180:70:69#HisKA:192:0.00000000000124:256:65:64#HATPase_c:303:1.24e-24:408:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550605::NZ_NVMK01000031.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span203287-205229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON29_21250RefSeq proteinWP_000798888.1
Context group ID
GCF_002550605::NZ_NVMK01000031.1::G00034Context members
CON29_RS21235CON29_RS21240
Partner locus tags
CON29_RS21235CON29_RS21240
Partner old locus tags
CON29_21245CON29_21250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000798888.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X7BVI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X7BVI0_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON29_RS21240Primary locus identifier stored in the genes table.
Old locus tagCON29_21250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMK01000031.1Sequence record reported by the local genomic context database.
Genomic interval203 994-205 229 nt1 236 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span203 287-205 229 ntGCF_002550605::NZ_NVMK01000031.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550605::NZ_NVMK01000031.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMK01000031.1All displayed genes belong to this local TCS context.
Neighborhood span203 287-205 229 nt1 943 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 287 nt205 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON29_RS21235GCF_002550605#CON29_RS21235
RROmpR
203 287-203 985 nt · Forward (+)
CON29_RS21240GCF_002550605#CON29_RS21240
HKClassicCurrent focus
203 994-205 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290775#IK7_RS13400Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2345392
Simplified PFAM architecture for HKOC_2345392
PFAM domain coverage: 171 / 411 aa (41.6%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-256] | HATPase_c[303-408]
- Domain count: 2
- Matched identifier: HKOC_2345392
- Positioned domains: HisKA 192-256 ; HATPase_c 303-408
Cluster members and taxonomy
Representative gene: GCF_000290775#IK7_RS13400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550605
AssemblyASM255060v1 · Scaffoldhaploid
Genome composition5 585 308 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key