1 GAF#1
19-160 aa · 142 aa · 38.9% of protein
Raw token
GAF:19:0.00000000191:160:142:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON29_RS08080
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550605
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550605#CON29_RS08080Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 365 aa (82.5%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
177-242 aa · 66 aa · 18.1% of protein
Raw token
HisKA_3:177:8.22e-17:242:68:683 HATPase_c#3
272-364 aa · 93 aa · 25.5% of protein
Raw token
HATPase_c:272:0.0000000000000806:364:108:109- Raw architecture: GAF:19:0.00000000191:160:142:133#HisKA_3:177:8.22e-17:242:68:68#HATPase_c:272:0.0000000000000806:364:108:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550605::NZ_NVMK01000011.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30203-31956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON29_08085RefSeq proteinWP_170925745.1
Context group ID
GCF_002550605::NZ_NVMK01000011.1::G00001Context members
CON29_RS08080CON29_RS08085
Partner locus tags
CON29_RS08080CON29_RS08085
Partner old locus tags
CON29_08085CON29_08090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_170925745.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON29_RS08080Primary locus identifier stored in the genes table.
Old locus tagCON29_08085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVMK01000011.1Sequence record reported by the local genomic context database.
Genomic interval30 203-31 300 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 203-31 956 ntGCF_002550605::NZ_NVMK01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550605::NZ_NVMK01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVMK01000011.1All displayed genes belong to this local TCS context.
Neighborhood span30 203-31 956 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 203 nt31 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON29_RS08080GCF_002550605#CON29_RS08080
HKClassicCurrent focus
30 203-31 300 nt · Forward (+)
CON29_RS08085GCF_002550605#CON29_RS08085
RRNarL
31 315-31 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS06980Use this link to inspect the representative gene detail.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2718437
Simplified PFAM architecture for HKOC_2718437
PFAM domain coverage: 297 / 365 aa (81.4%)
1 aa365 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[17-161] | HisKA_3[177-241] | HATPase_c[278-364]
- Domain count: 3
- Matched identifier: HKOC_2718437
- Positioned domains: GAF_2 17-161 ; HisKA_3 177-241 ; HATPase_c 278-364
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS06980
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 201 total members. Page 1 / 5.
GCF_000291035#ICE_RS06980 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550605
AssemblyASM255060v1 · Scaffoldhaploid
Genome composition5 585 308 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 108 · HK 59 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key