1 HAMP#1
313-380 aa · 68 aa · 11.0% of protein
Raw token
HAMP:313:0.0000000000000771:380:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS10575
Histidine kinase, Classic
Bacillus toyonensis · GCF_002550355
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550355#CON67_RS10575Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 619 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 HisKA#2
400-464 aa · 65 aa · 10.5% of protein
Raw token
HisKA:400:0.000000000000107:464:65:643 HATPase_c#3
511-615 aa · 105 aa · 17.0% of protein
Raw token
HATPase_c:511:3.57e-20:615:106:109- Raw architecture: HAMP:313:0.0000000000000771:380:68:69#HisKA:400:0.000000000000107:464:65:64#HATPase_c:511:3.57e-20:615:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550355::NZ_NVNZ01000024.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4255-6114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_10570RefSeq proteinWP_097957828.1
Context group ID
GCF_002550355::NZ_NVNZ01000024.1::G00023Context members
CON67_RS10575
Partner locus tags
CON67_RS10575
Partner old locus tags
CON67_10570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097957828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS10575Primary locus identifier stored in the genes table.
Old locus tagCON67_10570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000024.1Sequence record reported by the local genomic context database.
Genomic interval4 255-6 114 nt1 860 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 255-6 114 ntGCF_002550355::NZ_NVNZ01000024.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000024.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000024.1All displayed genes belong to this local TCS context.
Neighborhood span4 255-6 114 nt1 860 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 255 nt6 114 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CON67_RS10575GCF_002550355#CON67_RS10575
HKClassicCurrent focus
4 255-6 114 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550355#CON67_RS10575The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0975479
Simplified PFAM architecture for HKOC_0975479
PFAM domain coverage: 221 / 619 aa (35.7%)
1 aa619 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[331-380] | HisKA[400-464] | HATPase_c[511-616]
- Domain count: 3
- Matched identifier: HKOC_0975479
- Positioned domains: HAMP 331-380 ; HisKA 400-464 ; HATPase_c 511-616
Cluster members and taxonomy
Representative gene: GCF_002550355#CON67_RS10575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key