1 Response_reg#1
7-116 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:7:2.68e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS08990
Response regulator OmpR family
Bacillus toyonensis · GCF_002550355
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550355#CON67_RS08990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:1.68e-34:233:78:77- Raw architecture: Response_reg:7:2.68e-37:116:111:111#Trans_reg_C:156:1.68e-34:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550355::NZ_NVNZ01000020.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44501-46992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_08985RefSeq proteinWP_097957629.1
Context group ID
GCF_002550355::NZ_NVNZ01000020.1::G00022Context members
CON67_RS08990CON67_RS08995
Partner locus tags
CON67_RS08990CON67_RS08995
Partner old locus tags
CON67_08985CON67_08990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097957629.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS08990Primary locus identifier stored in the genes table.
Old locus tagCON67_08985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000020.1Sequence record reported by the local genomic context database.
Genomic interval44 501-45 217 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 501-46 992 ntGCF_002550355::NZ_NVNZ01000020.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000020.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000020.1All displayed genes belong to this local TCS context.
Neighborhood span44 501-46 992 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 501 nt46 992 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON67_RS08990GCF_002550355#CON67_RS08990
RROmpRCurrent focus
44 501-45 217 nt · Forward (+)
CON67_RS08995GCF_002550355#CON67_RS08995
HKClassic
45 217-46 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550355#CON67_RS08990The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0938653
Simplified PFAM architecture for RROC_0938653
PFAM domain coverage: 187 / 238 aa (78.6%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0938653
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_002550355#CON67_RS08990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key