1 HAMP#1
186-253 aa · 68 aa · 14.1% of protein
Raw token
HAMP:186:0.0000000000283:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS08620
Histidine kinase, Classic
Bacillus toyonensis · GCF_002550355
ClassHKTypeClassicLength481 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550355#CON67_RS08620Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length481 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 481 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa481 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-324 aa · 66 aa · 13.7% of protein
Raw token
HisKA:259:0.0000000000000444:324:66:643 HATPase_c#3
371-481 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:371:3.85e-33:481:111:109- Raw architecture: HAMP:186:0.0000000000283:253:70:69#HisKA:259:0.0000000000000444:324:66:64#HATPase_c:371:3.85e-33:481:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550355::NZ_NVNZ01000019.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54360-56541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_08615RefSeq proteinWP_000041011.1
Context group ID
GCF_002550355::NZ_NVNZ01000019.1::G00016Context members
CON67_RS08620CON67_RS08625
Partner locus tags
CON67_RS08620CON67_RS08625
Partner old locus tags
CON67_08615CON67_08620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000041011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS08620Primary locus identifier stored in the genes table.
Old locus tagCON67_08615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000019.1Sequence record reported by the local genomic context database.
Genomic interval54 360-55 805 nt1 446 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 360-56 541 ntGCF_002550355::NZ_NVNZ01000019.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000019.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span54 360-56 541 nt2 182 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 360 nt56 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON67_RS08620GCF_002550355#CON67_RS08620
HKClassicCurrent focus
54 360-55 805 nt · Reverse (-)
CON67_RS08625GCF_002550355#CON67_RS08625
RROmpR
55 870-56 541 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550355#CON67_RS08620The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1612759
Simplified PFAM architecture for HKOC_1612759
PFAM domain coverage: 225 / 481 aa (46.8%)
1 aa481 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-253] | HisKA[260-324] | HATPase_c[371-480]
- Domain count: 3
- Matched identifier: HKOC_1612759
- Positioned domains: HAMP 204-253 ; HisKA 260-324 ; HATPase_c 371-480
Cluster members and taxonomy
Representative gene: GCF_002550355#CON67_RS08620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key