1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:2.82e-25:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS08585
Response regulator, unclassified
Bacillus toyonensis · GCF_002550355
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550355#CON67_RS08585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 235 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.82e-25:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550355::NZ_NVNZ01000019.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46998-47705Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_08580RefSeq proteinWP_097957582.1
Context group ID
GCF_002550355::NZ_NVNZ01000019.1::G00015Context members
CON67_RS08585
Partner locus tags
CON67_RS08585
Partner old locus tags
CON67_08580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097957582.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS08585Primary locus identifier stored in the genes table.
Old locus tagCON67_08580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000019.1Sequence record reported by the local genomic context database.
Genomic interval46 998-47 705 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 998-47 705 ntGCF_002550355::NZ_NVNZ01000019.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000019.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span46 998-47 705 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 998 nt47 705 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CON67_RS08585GCF_002550355#CON67_RS08585
RRunclassifiedCurrent focus
46 998-47 705 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550355#CON67_RS08585The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1022758
Simplified PFAM architecture for RROC_1022758
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1022758
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_002550355#CON67_RS08585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key