1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:7.83e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS06815
Response regulator OmpR family
Bacillus toyonensis · GCF_002550355
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550355#CON67_RS06815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:1.89e-28:225:74:77- Raw architecture: Response_reg:5:7.83e-36:114:111:111#Trans_reg_C:155:1.89e-28:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550355::NZ_NVNZ01000015.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44580-47116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_06810RefSeq proteinWP_000041849.1
Context group ID
GCF_002550355::NZ_NVNZ01000015.1::G00010Context members
CON67_RS06815CON67_RS06820
Partner locus tags
CON67_RS06815CON67_RS06820
Partner old locus tags
CON67_06810CON67_06815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041849.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6LC61Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6LC61_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS06815Primary locus identifier stored in the genes table.
Old locus tagCON67_06810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000015.1Sequence record reported by the local genomic context database.
Genomic interval44 580-45 269 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 580-47 116 ntGCF_002550355::NZ_NVNZ01000015.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000015.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span44 580-47 116 nt2 537 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 580 nt47 116 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON67_RS06815GCF_002550355#CON67_RS06815
RROmpRCurrent focus
44 580-45 269 nt · Forward (+)
CON67_RS06820GCF_002550355#CON67_RS06820
HKClassic
45 266-47 116 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001044645#TU54_RS12805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1252674
Simplified PFAM architecture for RROC_1252674
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1252674
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_001044645#TU54_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key