1 HAMP#1
63-130 aa · 68 aa · 18.5% of protein
Raw token
HAMP:63:0.000000453:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS06600
Histidine kinase, Classic
Bacillus toyonensis · GCF_002550355
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550355#CON67_RS06600Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 368 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.5% of protein
Raw token
HisKA:141:0.000000000000509:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.4% of protein
Raw token
HATPase_c:253:3.73e-26:364:113:109- Raw architecture: HAMP:63:0.000000453:130:68:69#HisKA:141:0.000000000000509:208:68:64#HATPase_c:253:3.73e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550355::NZ_NVNZ01000015.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3086-4883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_06595RefSeq proteinWP_000002593.1
Context group ID
GCF_002550355::NZ_NVNZ01000015.1::G00008Context members
CON67_RS06595CON67_RS06600
Partner locus tags
CON67_RS06595CON67_RS06600
Partner old locus tags
CON67_06590CON67_06595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000002593.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X3MNL6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X3MNL6_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS06600Primary locus identifier stored in the genes table.
Old locus tagCON67_06595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000015.1Sequence record reported by the local genomic context database.
Genomic interval3 777-4 883 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 086-4 883 ntGCF_002550355::NZ_NVNZ01000015.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000015.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000015.1All displayed genes belong to this local TCS context.
Neighborhood span3 086-4 883 nt1 798 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 086 nt4 883 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON67_RS06595GCF_002550355#CON67_RS06595
RROmpR
3 086-3 784 nt · Forward (+)
CON67_RS06600GCF_002550355#CON67_RS06600
HKClassicCurrent focus
3 777-4 883 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290815#IK3_RS03380Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698182
Simplified PFAM architecture for HKOC_2698182
PFAM domain coverage: 222 / 368 aa (60.3%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[85-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2698182
- Positioned domains: HAMP 85-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_000290815#IK3_RS03380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key