1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:5.05e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CON67_RS05250
Histidine kinase, Classic
Bacillus toyonensis · GCF_002550355
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550355#CON67_RS05250Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 466 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:1.91e-19:304:67:643 HATPase_c#3
350-457 aa · 108 aa · 23.2% of protein
Raw token
HATPase_c:350:6.96e-32:457:108:109- Raw architecture: HAMP:168:5.05e-16:234:67:69#HisKA:238:1.91e-19:304:67:64#HATPase_c:350:6.96e-32:457:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550355::NZ_NVNZ01000010.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139498-141573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCON67_05245RefSeq proteinWP_000494807.1
Context group ID
GCF_002550355::NZ_NVNZ01000010.1::G00003Context members
CON67_RS05245CON67_RS05250
Partner locus tags
CON67_RS05245CON67_RS05250
Partner old locus tags
CON67_05240CON67_05245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000494807.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCON67_RS05250Primary locus identifier stored in the genes table.
Old locus tagCON67_05245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVNZ01000010.1Sequence record reported by the local genomic context database.
Genomic interval140 173-141 573 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 498-141 573 ntGCF_002550355::NZ_NVNZ01000010.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550355::NZ_NVNZ01000010.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVNZ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span139 498-141 573 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 498 nt141 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CON67_RS05245GCF_002550355#CON67_RS05245
RROmpR
139 498-140 169 nt · Forward (+)
CON67_RS05250GCF_002550355#CON67_RS05250
HKClassicCurrent focus
140 173-141 573 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550355#CON67_RS05250The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1763959
Simplified PFAM architecture for HKOC_1763959
PFAM domain coverage: 222 / 466 aa (47.6%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-458]
- Domain count: 3
- Matched identifier: HKOC_1763959
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-458
Cluster members and taxonomy
Representative gene: GCF_002550355#CON67_RS05250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 155 322 · GCF_002550355
AssemblyASM255035v1 · Scaffoldhaploid
Genome composition5 991 951 bp · 35,0% GCBacillus toyonensis
Signal transduction countsGenes 132 · HK 72 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key