1 HisKA_3#1
403-467 aa · 65 aa · 10.7% of protein
Raw token
HisKA_3:403:4.24e-18:467:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS19900
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS19900Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 610 aa (24.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
517-603 aa · 87 aa · 14.3% of protein
Raw token
HATPase_c:517:0.000000000000104:603:97:109- Raw architecture: HisKA_3:403:4.24e-18:467:65:68#HATPase_c:517:0.000000000000104:603:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000029.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25551-28026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_19900RefSeq proteinWP_090976624.1
Context group ID
GCF_002550295::NZ_NVKZ01000029.1::G00023Context members
COM87_RS19895COM87_RS19900
Partner locus tags
COM87_RS19895COM87_RS19900
Partner old locus tags
COM87_19895COM87_19900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_090976624.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6B791Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6B791_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS19900Primary locus identifier stored in the genes table.
Old locus tagCOM87_19900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000029.1Sequence record reported by the local genomic context database.
Genomic interval26 194-28 026 nt1 833 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 551-28 026 ntGCF_002550295::NZ_NVKZ01000029.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000029.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000029.1All displayed genes belong to this local TCS context.
Neighborhood span25 551-28 026 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 551 nt28 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS19895GCF_002550295#COM87_RS19895
RRNarL
25 551-26 192 nt · Reverse (-)
COM87_RS19900GCF_002550295#COM87_RS19900
HKClassicCurrent focus
26 194-28 026 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS19900The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1005265
Simplified PFAM architecture for HKOC_1005265
PFAM domain coverage: 157 / 610 aa (25.7%)
1 aa610 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[513-604]
- Domain count: 2
- Matched identifier: HKOC_1005265
- Positioned domains: HisKA_3 403-467 ; HATPase_c 513-604
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS19900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key