1 HAMP#1
288-356 aa · 69 aa · 11.4% of protein
Raw token
HAMP:288:0.00000000000519:356:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS17365
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550295#COM87_RS17365Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 604 aa (37.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 HisKA#2
382-445 aa · 64 aa · 10.6% of protein
Raw token
HisKA:382:1.76e-17:445:64:643 HATPase_c#3
490-581 aa · 92 aa · 15.2% of protein
Raw token
HATPase_c:490:1.18e-23:581:92:109- Raw architecture: HAMP:288:0.00000000000519:356:69:69#HisKA:382:1.76e-17:445:64:64#HATPase_c:490:1.18e-23:581:92:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550295::NZ_NVKZ01000021.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span188758-190572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_17365RefSeq proteinWP_090975937.1
Context group ID
GCF_002550295::NZ_NVKZ01000021.1::G00015Context members
COM87_RS17365
Partner locus tags
COM87_RS17365
Partner old locus tags
COM87_17365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_090975937.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6B8W0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6B8W0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS17365Primary locus identifier stored in the genes table.
Old locus tagCOM87_17365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000021.1Sequence record reported by the local genomic context database.
Genomic interval188 758-190 572 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span188 758-190 572 ntGCF_002550295::NZ_NVKZ01000021.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000021.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000021.1All displayed genes belong to this local TCS context.
Neighborhood span188 758-190 572 nt1 815 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 758 nt190 572 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COM87_RS17365GCF_002550295#COM87_RS17365
HKClassicCurrent focus
188 758-190 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS17365The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033474
Simplified PFAM architecture for HKOC_1033474
PFAM domain coverage: 211 / 604 aa (34.9%)
1 aa604 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[306-355] | HisKA[382-445] | HATPase_c[492-588]
- Domain count: 3
- Matched identifier: HKOC_1033474
- Positioned domains: HAMP 306-355 ; HisKA 382-445 ; HATPase_c 492-588
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS17365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key