1 HAMP#1
39-109 aa · 71 aa · 20.4% of protein
Raw token
HAMP:39:0.000000000481:109:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS15905
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength348 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS15905Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length348 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 348 aa (71.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa348 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-187 aa · 68 aa · 19.5% of protein
Raw token
HisKA:120:1.41e-17:187:68:643 HATPase_c#3
238-348 aa · 111 aa · 31.9% of protein
Raw token
HATPase_c:238:2.33e-26:348:111:109- Raw architecture: HAMP:39:0.000000000481:109:71:69#HisKA:120:1.41e-17:187:68:64#HATPase_c:238:2.33e-26:348:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000018.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64648-66404Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_15905RefSeq proteinWP_000776986.1
Context group ID
GCF_002550295::NZ_NVKZ01000018.1::G00005Context members
COM87_RS15900COM87_RS15905
Partner locus tags
COM87_RS15900COM87_RS15905
Partner old locus tags
COM87_15900COM87_15905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000776986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS15905Primary locus identifier stored in the genes table.
Old locus tagCOM87_15905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000018.1Sequence record reported by the local genomic context database.
Genomic interval65 358-66 404 nt1 047 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 648-66 404 ntGCF_002550295::NZ_NVKZ01000018.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000018.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000018.1All displayed genes belong to this local TCS context.
Neighborhood span64 648-66 404 nt1 757 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 648 nt66 404 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS15900GCF_002550295#COM87_RS15900
RROmpR
64 648-65 361 nt · Forward (+)
COM87_RS15905GCF_002550295#COM87_RS15905
HKClassicCurrent focus
65 358-66 404 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291415#IE9_RS26660Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2806294
Simplified PFAM architecture for HKOC_2806294
PFAM domain coverage: 232 / 348 aa (66.7%)
1 aa348 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[56-109] | HisKA[120-187] | HATPase_c[238-347]
- Domain count: 3
- Matched identifier: HKOC_2806294
- Positioned domains: HAMP 56-109 ; HisKA 120-187 ; HATPase_c 238-347
Cluster members and taxonomy
Representative gene: GCF_000291415#IE9_RS26660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key