1 HisKA_3#1
584-650 aa · 67 aa · 8.6% of protein
Raw token
HisKA_3:584:0.000000000801:650:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS10270
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength783 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS10270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length783 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 783 aa (20.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa783 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
689-781 aa · 93 aa · 11.9% of protein
Raw token
HATPase_c:689:0.00000000000000205:781:106:109- Raw architecture: HisKA_3:584:0.000000000801:650:68:68#HATPase_c:689:0.00000000000000205:781:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000008.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span377546-380542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_10275RefSeq proteinWP_176542757.1
Context group ID
GCF_002550295::NZ_NVKZ01000008.1::G00065Context members
COM87_RS10265COM87_RS10270
Partner locus tags
COM87_RS10265COM87_RS10270
Partner old locus tags
COM87_10270COM87_10275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_176542757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS10270Primary locus identifier stored in the genes table.
Old locus tagCOM87_10275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000008.1Sequence record reported by the local genomic context database.
Genomic interval378 191-380 542 nt2 352 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span377 546-380 542 ntGCF_002550295::NZ_NVKZ01000008.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000008.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span377 546-380 542 nt2 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
377 546 nt380 542 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS10265GCF_002550295#COM87_RS10265
RRNarL
377 546-378 187 nt · Reverse (-)
COM87_RS10270GCF_002550295#COM87_RS10270
HKClassicCurrent focus
378 191-380 542 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS10270The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0588576
Simplified PFAM architecture for HKOC_0588576
PFAM domain coverage: 156 / 783 aa (19.9%)
1 aa783 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[584-649] | HATPase_c[692-781]
- Domain count: 2
- Matched identifier: HKOC_0588576
- Positioned domains: HisKA_3 584-649 ; HATPase_c 692-781
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS10270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key