1 HisKA_3#1
177-244 aa · 68 aa · 18.6% of protein
Raw token
HisKA_3:177:6.98e-20:244:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS07065
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS07065Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 366 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
289-365 aa · 77 aa · 21.0% of protein
Raw token
HATPase_c:289:0.0000000000441:365:97:109- Raw architecture: HisKA_3:177:6.98e-20:244:68:68#HATPase_c:289:0.0000000000441:365:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000007.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69731-71474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_07065RefSeq proteinWP_097924304.1
Context group ID
GCF_002550295::NZ_NVKZ01000007.1::G00053Context members
COM87_RS07060COM87_RS07065
Partner locus tags
COM87_RS07060COM87_RS07065
Partner old locus tags
COM87_07060COM87_07065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_097924304.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5XQ54Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5XQ54_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS07065Primary locus identifier stored in the genes table.
Old locus tagCOM87_07065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000007.1Sequence record reported by the local genomic context database.
Genomic interval70 374-71 474 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 731-71 474 ntGCF_002550295::NZ_NVKZ01000007.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000007.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span69 731-71 474 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 731 nt71 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS07060GCF_002550295#COM87_RS07060
RRNarL
69 731-70 369 nt · Forward (+)
COM87_RS07065GCF_002550295#COM87_RS07065
HKClassicCurrent focus
70 374-71 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS07065The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2713251
Simplified PFAM architecture for HKOC_2713251
PFAM domain coverage: 144 / 366 aa (39.3%)
1 aa366 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[177-243] | HATPase_c[289-365]
- Domain count: 2
- Matched identifier: HKOC_2713251
- Positioned domains: HisKA_3 177-243 ; HATPase_c 289-365
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key