1 HAMP#1
165-234 aa · 70 aa · 15.3% of protein
Raw token
HAMP:165:3.83e-16:234:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS05445
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS05445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 458 aa (53.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.6% of protein
Raw token
HisKA:238:0.0000000000000022:304:67:643 HATPase_c#3
348-457 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:348:2.04e-34:457:110:109- Raw architecture: HAMP:165:3.83e-16:234:70:69#HisKA:238:0.0000000000000022:304:67:64#HATPase_c:348:2.04e-34:457:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000005.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span238541-240596Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_05445RefSeq proteinWP_016512570.1
Context group ID
GCF_002550295::NZ_NVKZ01000005.1::G00045Context members
COM87_RS05440COM87_RS05445
Partner locus tags
COM87_RS05440COM87_RS05445
Partner old locus tags
COM87_05440COM87_05445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016512570.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5KZ12Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5KZ12_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS05445Primary locus identifier stored in the genes table.
Old locus tagCOM87_05445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval239 220-240 596 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span238 541-240 596 ntGCF_002550295::NZ_NVKZ01000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span238 541-240 596 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
238 541 nt240 596 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS05440GCF_002550295#COM87_RS05440
RROmpR
238 541-239 218 nt · Forward (+)
COM87_RS05445GCF_002550295#COM87_RS05445
HKClassicCurrent focus
239 220-240 596 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS08265Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1859029
Simplified PFAM architecture for HKOC_1859029
PFAM domain coverage: 226 / 458 aa (49.3%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-233] | HisKA[238-303] | HATPase_c[348-457]
- Domain count: 3
- Matched identifier: HKOC_1859029
- Positioned domains: HAMP 184-233 ; HisKA 238-303 ; HATPase_c 348-457
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS08265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key