1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:8.77e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS04120
Response regulator OmpR family
Bacillus thuringiensis · GCF_002550295
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS04120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:4.81e-31:229:77:77- Raw architecture: Response_reg:5:8.77e-37:114:111:111#Trans_reg_C:153:4.81e-31:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64816-66658Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_04120RefSeq proteinWP_001038809.1
Context group ID
GCF_002550295::NZ_NVKZ01000004.1::G00042Context members
COM87_RS04120COM87_RS04125
Partner locus tags
COM87_RS04120COM87_RS04125
Partner old locus tags
COM87_04120COM87_04125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001038809.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4HF17Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4HF17_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS04120Primary locus identifier stored in the genes table.
Old locus tagCOM87_04120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval64 816-65 511 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 816-66 658 ntGCF_002550295::NZ_NVKZ01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span64 816-66 658 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 816 nt66 658 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS04120GCF_002550295#COM87_RS04120
RROmpRCurrent focus
64 816-65 511 nt · Forward (+)
COM87_RS04125GCF_002550295#COM87_RS04125
HKClassic
65 501-66 658 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS11780Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158205
Simplified PFAM architecture for RROC_1158205
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1158205
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS11780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key