1 HAMP#1
111-180 aa · 70 aa · 17.0% of protein
Raw token
HAMP:111:0.00000734:180:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS02340
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS02340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 411 aa (58.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation3 items
2 HisKA#2
192-256 aa · 65 aa · 15.8% of protein
Raw token
HisKA:192:0.0000000000011:256:65:643 HATPase_c#3
303-408 aa · 106 aa · 25.8% of protein
Raw token
HATPase_c:303:1.38e-24:408:106:109- Raw architecture: HAMP:111:0.00000734:180:70:69#HisKA:192:0.0000000000011:256:65:64#HATPase_c:303:1.38e-24:408:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span429806-431748Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_02340RefSeq proteinWP_090977697.1
Context group ID
GCF_002550295::NZ_NVKZ01000001.1::G00010Context members
COM87_RS02340COM87_RS02345
Partner locus tags
COM87_RS02340COM87_RS02345
Partner old locus tags
COM87_02340COM87_02345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_090977697.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6B606Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6B606_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS02340Primary locus identifier stored in the genes table.
Old locus tagCOM87_02340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval429 806-431 041 nt1 236 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span429 806-431 748 ntGCF_002550295::NZ_NVKZ01000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span429 806-431 748 nt1 943 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
429 806 nt431 748 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS02340GCF_002550295#COM87_RS02340
HKClassicCurrent focus
429 806-431 041 nt · Reverse (-)
COM87_RS02345GCF_002550295#COM87_RS02345
RROmpR
431 050-431 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS02340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2346502
Simplified PFAM architecture for HKOC_2346502
PFAM domain coverage: 171 / 411 aa (41.6%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-256] | HATPase_c[303-408]
- Domain count: 2
- Matched identifier: HKOC_2346502
- Positioned domains: HisKA 192-256 ; HATPase_c 303-408
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS02340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key