1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.00000000000000175:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM87_RS00710
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550295
ClassHKTypeClassicLength490 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002550295#COM87_RS00710Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length490 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 490 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa490 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.5% of protein
Raw token
HisKA:258:0.0000000000025:323:66:643 HATPase_c#3
374-480 aa · 107 aa · 21.8% of protein
Raw token
HATPase_c:374:3.01e-17:480:108:109- Raw architecture: HAMP:164:0.00000000000000175:233:70:69#HisKA:258:0.0000000000025:323:66:64#HATPase_c:374:3.01e-17:480:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002550295::NZ_NVKZ01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span123549-125679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM87_00710RefSeq proteinWP_175495696.1
Context group ID
GCF_002550295::NZ_NVKZ01000001.1::G00008Context members
COM87_RS00705COM87_RS00710
Partner locus tags
COM87_RS00705COM87_RS00710
Partner old locus tags
COM87_00705COM87_00710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_175495696.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM87_RS00710Primary locus identifier stored in the genes table.
Old locus tagCOM87_00710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKZ01000001.1Sequence record reported by the local genomic context database.
Genomic interval124 207-125 679 nt1 473 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span123 549-125 679 ntGCF_002550295::NZ_NVKZ01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550295::NZ_NVKZ01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKZ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span123 549-125 679 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
123 549 nt125 679 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COM87_RS00705GCF_002550295#COM87_RS00705
RROmpR
123 549-124 214 nt · Forward (+)
COM87_RS00710GCF_002550295#COM87_RS00710
HKClassicCurrent focus
124 207-125 679 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550295#COM87_RS00710The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1535004
Simplified PFAM architecture for HKOC_1535004
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[373-480]
- Domain count: 3
- Matched identifier: HKOC_1535004
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 373-480
Cluster members and taxonomy
Representative gene: GCF_002550295#COM87_RS00710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550295
AssemblyASM255029v1 · Scaffoldhaploid
Genome composition5 655 486 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key