1 GAF#1
23-163 aa · 141 aa · 20.8% of protein
Raw token
GAF:23:0.00000000000000179:163:143:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COM85_RS12910
Histidine kinase, Classic
Bacillus thuringiensis · GCF_002550215
ClassHKTypeClassicLength677 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002550215#COM85_RS12910Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFPAS_9HisKAHATPase_c
Protein length677 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage392 / 677 aa (57.9%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa677 aa
Domain-by-domain annotation4 items
2 PAS_9#2
352-446 aa · 95 aa · 14.0% of protein
Raw token
PAS_9:352:0.00000306:446:107:1023 HisKA#3
464-521 aa · 58 aa · 8.6% of protein
Raw token
HisKA:464:0.0000000000000214:521:58:644 HATPase_c#4
573-670 aa · 98 aa · 14.5% of protein
Raw token
HATPase_c:573:9.02e-19:670:103:109- Raw architecture: GAF:23:0.00000000000000179:163:143:133#PAS_9:352:0.00000306:446:107:102#HisKA:464:0.0000000000000214:521:58:64#HATPase_c:573:9.02e-19:670:103:109
- Domain description: 1 GAF,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002550215::NZ_NVKR01000053.1::G00040
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span37694-39727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOM85_12910RefSeq proteinWP_097984177.1
Context group ID
GCF_002550215::NZ_NVKR01000053.1::G00040Context members
COM85_RS12910
Partner locus tags
COM85_RS12910
Partner old locus tags
COM85_12910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_097984177.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOM85_RS12910Primary locus identifier stored in the genes table.
Old locus tagCOM85_12910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NVKR01000053.1Sequence record reported by the local genomic context database.
Genomic interval37 694-39 727 nt2 034 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 694-39 727 ntGCF_002550215::NZ_NVKR01000053.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002550215::NZ_NVKR01000053.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NVKR01000053.1All displayed genes belong to this local TCS context.
Neighborhood span37 694-39 727 nt2 034 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 694 nt39 727 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COM85_RS12910GCF_002550215#COM85_RS12910
HKClassicCurrent focus
37 694-39 727 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002550215#COM85_RS12910The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0825418
Simplified PFAM architecture for HKOC_0825418
PFAM domain coverage: 300 / 677 aa (44.3%)
1 aa677 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[24-163] | HisKA[464-521] | HATPase_c[570-671]
- Domain count: 3
- Matched identifier: HKOC_0825418
- Positioned domains: GAF 24-163 ; HisKA 464-521 ; HATPase_c 570-671
Cluster members and taxonomy
Representative gene: GCF_002550215#COM85_RS12910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_002550215
AssemblyASM255021v1 · Scaffoldhaploid
Genome composition6 105 600 bp · 35,0% GCBacillus thuringiensis
Signal transduction countsGenes 118 · HK 64 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key